∞ generated and posted on 2016.02.27 ∞

Diseases and conditions of the digestive system include those associated both with the gastrointestinal tract and accessory organs, such as the liver and pancreas.

Diseases of the digestive system include appendicitis, cirrhosis, colon cancer, constipation, Crohn's disease, diarrhea, diverticulitis, dysentery, fistula, gallstones, gastritis, gastroesophageal reflux disease, heartburn, hemorrhoids, hepatitis, hiatal hernia, irritable bowel syndrome, inflammatory bowel disease, pancreatitis, peritonitis, stomach ulcer, ulcerative colitis, etc.

This page contains the following terms: Cirrhosis, Gallstones, Hepatitis, Hiatal hernia, Irritable bowel syndrome, Inflammatory bowel disease, Crohn's disease, Ulcerative colitis, Microbiome, Normal flora, Beneficial bacteria, Probiotic, Clostridium difficile, Fecal transplant


Loss of liver function associated with replacement of normal liver tissue with various forms of scarring.
Cirrhosis can result from alcoholism, viral infection (most notably as caused by hepatitis B virus or hepatitis C virus), or other causes. It can lead to retention of fluids within the abdominal cavity and other often relatively severe symptoms.

Links to terms of possible interest: Cirrhosis, Excessive alcohol consumption, Liver, Scar tissue,

Considering it has no voice over and is not very detailed, the above video nonetheless is surprisingly effective.


Crystalline precipitation within bile that can lead to pain, obstruction of bile release, and also infections.
Gallstones form particularly within the gallbladder but can pass into the various associated ducts, where obstruction of bile movement can as a consequence occur. Obstruction of ducts can be life threatening particularly to the extent that movement of pancreatic juices is obstructed.

Gallstones can be differentiated particularly into what are known as "cholesterol" stones versus "pigment" stones, depending on their chemical make up. Cholesterol stones consist, not surprisingly, primarily of cholesterol. Pigment stones consist as well of the pigment and heme breakdown compound known as bilirubin.

Links to terms of possible interest: Common bile duct, Choledocholithiasis, Cholelithiasis, Cystic duct, Duodenum, Gallbladder, Gallstone

The above video discusses the liver, bile, and gallbladder with specific discussion of gallstones beginning at 2:27.

We're Still Golden owes its title to Kempowski's mother, who, as the Red Army swept into Rostock, remarked: "So long as you don't have gallstones or TB, we're still golden" — Michael Lipkin, "Gathering Fate", The Nation, Oct. 27, 2014, p. 33


Inflammation of the liver.
Hepatitis is a disease with numerous potential causes but its results can be a degree of liver dysfunction. Symptoms can include jaundice (a yellowing of the skin), loss of appetite, and generally feelings of lack of wellbeing (malaise). Hepatitis can be distinguished into acute disease versus chronic disease, with the dividing line being six months of duration, that is, with acute hepatitis lasting by definition less than six months while chronic hepatitis lasts longer than six months. Causes of hepatitis include alcohol abuse and drug abuse, other non-infectious causes, and that caused by infections by viruses. The viruses hepatitis A virus, hepatitis B virus, and hepatitis C virus are the most common causes of hepatitis.

The above video begins with discussion of what the liver does, moves into what symptoms can coincide with low liver function, and then spends more than the second half of the video consider specifically hepatitis C.

Hiatal hernia

Imperfection in the thoracic diaphragm that allows the stomach to protrude into the thoracic cavity.
Part of the means by which the stomach contents are kept separate from the esophagus, in addition to the presence of the lower esophageal sphincter, is the presence of the stomach below rather than above the thoracic diaphragm, that is, the muscle which separates the thoracic cavity from the abdominal cavity and which we employ in breathing.

The esophagus normally passes through the diaphragm whereas in a either the stomach is found in this opening instead of the esophagus or the stomach protrudes into the thoracic cavity, through the diaphragm. Hiatal hernias become increasingly common with age and are associated with a fairly large number of symptoms, most notably acid reflux/heartburn.

The above video considers what a is, what are some of the resulting symptoms, and how hiatal hernias can be treated, including a fascinating look at robotic surgery.

Irritable bowel syndrome

Symptoms characterized by abdominal pain over extended periods, excessive intestinal gas, and diarrhea or constipation or alternating bouts of both.
Irritable bowel syndrome, or IBS, is distinct from inflammatory bowel disease and can be associated with gastrointestinal infections as well as in response to otherwise stressful situations or anxiety. Frequency of symptoms of at least three affected days per month for three months are consistent with a diagnosis of IBS.

Treatment can include medications as well as dietary changes, the latter including changes in response to possible lactose intolerance as symptoms of lactose intolerance can be similar to those of IBS. Celiac disease as well as colon cancer can also mimic IBS. Caffeine, large meals, lack of exercise, poor sleep habits, and diets that are low in fiber can exacerbate symptoms. IBS is not known to impact life expectancy.

The above video provides a nice introduction to irritable bowel syndrome.

Inflammatory bowel disease

Gastrointestinal tract immunological disorders associated especially with ulcerations of the intestines.
Inflammatory bowel disease, or IBD, can be differentiated especially into at least two mostly distinct diseases known as Crohn's disease versus ulcerative colitis. Symptoms are gastrointestinal including pain in the abdominal area and diarrhea and potentially also vomiting and weight loss. Causes are a combination of genetic and environmental with some association with antibiotic use, the latter which can cause changes in the types of bacteria that reside in your gut (i.e., your normal microbiota or microbiome). These changes in some manner leads to an immune response that attacks the body's own tissues. IBD often is characterized by periods of active disease that are interspersed with periods of remission.

The above video provides an excellent overview of inflammatory bowel disease.

Crohn's disease

Non-autoimmune inflammatory disease of the gastrointestinal tract.
Crohn's disease is considered to be a form of inflammatory bowel disease, but that can affect more than the bowel. It is a chronic inflammatory disease that can result in numerous gastrointestinal symptoms, including diarrhea, but also symptoms seen outside of the gastrointestinal tract. Despite not being an autoimmune disease, symptoms nonetheless stem from immune system attack of gastrointestinal tract tissues. Smoking cigarettes can substantially increase one's risk for Crohn's disease though there are other environmental as well as genetic risk factors as well.

The above video is a well done, professionally produced video on Crohn's disease.

The above video can best be thought of as a "cute", and brief, introduction to Crohn's disease.

The above video provides a more in-depth overview of Crohn's disease.

Ulcerative colitis

Non-autoimmune inflammatory disease especially of the large intestine.
Ulcerative colitis is considered to be a form of inflammatory bowel disease. Contrasting Crohn's disease, ulcerative colitis predominantly affects the large intestine rather than the small intestine. In addition, with ulcerative colitis the rectum is always involved.

Ulcerative colitis is a chronic inflammatory disease that can result in numerous gastrointestinal symptoms, including bloody diarrhea, but also symptoms seen outside of the gastrointestinal tract. Despite not being an autoimmune disease, symptoms nonetheless stem from immune system attack of gastrointestinal tract tissues.

The above video provides an excellent overview of ulcerative colitis.

The above video provides a brief overview of ulcerative colitis and is particularly good in terms of its illustrated depiction of what the ulcerations look like.


Those microorganisms found in association with a given environment and particularly from the perspective of what genes they carry as well as what impact they have.
All environments that possess living things possess microbiomes, and especially in more severe environments they possess only microbiomes among living things. The concept of microbiome, however, goes beyond the existence of the microorganisms that live within environments but also considers the genes associated with those microorganisms. These genes to a large extent contribute to the survival, propagation, and otherwise functioning of the microorganisms found in environments. In addition, however, these genes can play beneficial as well as detrimental roles within these environments. Included among environments are those associated with larger organisms such as ourselves, e.g., such as is found within our gastrointestinal tracts.

The above video provides a nice introduction to the concept of microbiome.

The above video provides a rather pretty introduction to the concept of microbiome.

Normal flora

Those microorganisms consistently present within a specific environment.
Also known as normal microbiota, the normal flora can be viewed as equivalent to microbiomes but especially from the perspective of individual organisms, and their more organismal properties, rather than as viewed particularly from the perspective of their genes. In addition, the concept of "normal" to a degree implies that these are the microorganisms that contribute the "normal" functioning of environments, which for us would be those microorganisms other than pathogens that are actively causing disease.

Normal flora microorganisms can be differentiated into those which can be viewed as resident normal flora versus transient normal flora. Disease-causing microorganisms as well as what can be described as probiotics are included among the latter. The goal with fecal transplants is to replace the former. Nevertheless, resident normal flora can be harmful as well, though more chronic rather than acute in their impact.

Beneficial bacteria

Particularly those normal flora members that contribute to healthy or optimal functioning of the environment in which they are able to reside though also which can be temporarily added to those environments.
Beneficial bacteria can be either resident normal flora or transient normal flora, which are microorganisms that live as populations in association with our bodies either over long periods (years) or instead short periods (e.g., less than a month). The goal with a fecal transplant is to replace less beneficial bacteria that make up resistant normal flora with more beneficial bacteria, that is, which are more effective in contributing to the health of environment in which they reside (e.g., such as the environment found within the lumen of our gastrointestinal tracts). Alternatively, probiotics ideally serve as beneficial bacteria, though ones that can serve more as transient normal flora rather than as resident normal flora. Thus, beneficial bacteria contribute to good, better, or optimal functioning of the environments in which they reside though their residence may or may not be permanent but instead, such as in terms of probiotics, can require periodic reinoculation.


Microorganisms that can contribute to healthy or optimal functioning of especially gastrointestinal tract environments when they are temporarily added to those environments as when eaten.
Generally the health claims associated with probiotic microorganisms have not been extremely well substantiated, though in part this may be a consequence of difficulties in substantiating any procedure that has small or variable effects. That is, such substantiation at a minimum often requires fairly large inputs of money and other resources so as to perform efficacy trials (i.e., phase III medical trials). Alternatively, tendencies may be identified and, at least to a first approximation, safety can be ascertained.

There thus exist a number of probiotic products with possible health benefits that probably are not harmful. The question then comes down to ones of convenience, perceived utility, appreciation (such as in terms of taste), and overall cost. Historically, note that it has been common to consume foods that possess living microorganisms in them, e.g., yogurt and other fermented foods, so actually consuming microorganisms in one's diet should not be viewed as inherently problematic. To what degree these microorganisms are actually providing us with health benefits, however, is not highly rigorously understood.

Clostridium difficile

Cause of severe, antibiotic-associated diarrhea.
Clostridium difficile, or "C. diff", is normally a soil bacterium though in a subset of adults is a member of the gastrointestinal normal flora. C. diff produces endospores that are highly durable can be ingested, thereby allowing passage of this organism between adults. Typically the presence of C. diff within gastrointestinal tracts does not cause disease, however, because resident normal flora tend to display what is known as microbial antagonism, that is, various means by which they can serve to keep other, including potentially harmful microorganisms (e.g., pathogens) from excessively increasing in numbers.

It is only when these resident normal flora are severely disrupted, such as in the course of antibiotic treatment, can these other, potentially pathogenic microorganisms excessively increase in numbers, resulting in what is described as an antibiotic-associated superinfection. C. diff infections occur by this route, resulting in harmful and even potentially deadly colitis that tends to be fairly resistant to treatment using standard antibiotics.

The above video provides a pretty good overview of Clostridium difficile infection.

The above video considers Clostridium difficile from a fairly sophisticated perspective.

Fecal transplant

Intentional movement of especially beneficial bacteria from one individual's gastrointestinal tract to another's, particularly as a medical procedure.
Fecal transplantation literally is the movement of feces from a healthy donor to a typically unhealthy recipient. This is equivalent to the transplantation of cells, tissues, organs, etc. from one individual to another. A distinction, though, is that feces typically are not missed by the donor individual (e.g., just as, to a lesser extent, blood is not missed by donors) and issues of rejection by the recipient are either not an issue or otherwise are not well understood.

The fecal transplantation procedure itself involves a degree of processing of the feces, particularly to separate bacteria from more solid materials, and then exposure, often post-stomach, of a patient to the potentially beneficial bacteria found within the transplanted feces. Ideally these bacteria will take up residence and contribute to an improvement in the health of the recipient, such as in terms of fighting C. diff infections, which have been found to respond favorably to fecal transplantation.

The above video provides a nice primer on fecal transplantation.